PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462915246
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family B3
Protein Properties Length: 209aa    MW: 23896.4 Da    PI: 9.3928
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462915246genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B355.88.5e-18821671399
                T.T-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
         B3  13 s.grlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 
                  + lv++k +aeeh   +++s  +tle +  ++W+v+l +r  +++y+l++ W +Fv++ +Lk +D+++++ ++ +ef+ +v+++++
  462915246  82 PgASLVISKGYAEEHF--PAKSENITLERPGRKKWRVRLHVRPEGRGYLLSGHWADFVRDIHLKLNDVCILEPIKGNEFRVMVHLLDE 167
                24789**********7..456778***************99*******************************9999***999999875 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019361.39E-2265166IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.103.1E-2265163IPR015300DNA-binding pseudobarrel domain
CDDcd100177.42E-2168163No hitNo description
SMARTSM010192.6E-1170168IPR003340B3 DNA binding domain
PROSITE profilePS5086311.68871168IPR003340B3 DNA binding domain
PfamPF023621.2E-1676167IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 209 aa     Download sequence    Send to blast
MRFDMAGRCG QTGPPCDGED SLPELQSLQS DHEEILSKHC FFPSRCNLTA EQEEELAELV  60
KKILPEFPLL VTRMKKSNVK GPGASLVISK GYAEEHFPAK SENITLERPG RKKWRVRLHV  120
RPEGRGYLLS GHWADFVRDI HLKLNDVCIL EPIKGNEFRV MVHLLDERCS HSTRGTNKSN  180
KRGTRKVTPT VHAQEKSGRR IFTNHCLFR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP2959434
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G13260.14e-07related to ABI3/VP1 1